Scanpy tutorials#
See this page for more context.
- Using other kNN libraries in Scanpy
- Plotting with Marsilea
- Preprocessing and clustering
- Preprocessing and clustering 3k PBMCs (legacy workflow)
- Integrating data using ingest and BBKNN
- Core plotting functions
- Customizing Scanpy plots
- Using
dask
with Scanpy - How to preprocess UMI count data with analytic Pearson residuals
- Analysis and visualization of spatial transcriptomics data
- Integrating spatial data with scRNA-seq using scanorama
- Trajectory inference for hematopoiesis in mouse