Scanpy tutorials

See this page for more context.

• Using other kNN libraries in Scanpy
• Preprocessing and clustering
• Preprocessing and clustering 3k PBMCs (legacy workflow)
• Integrating data using ingest and BBKNN
• Core plotting functions
• Customizing Scanpy plots
• Plotting with Marsilea
• Heatmap
• Matrixplot
• Dot plot
• Tracksplot
• Stacked Violin
• More information
• Using dask with Scanpy
• How to preprocess UMI count data with analytic Pearson residuals
• Analysis and visualization of spatial transcriptomics data
• Integrating spatial data with scRNA-seq using scanorama
• Trajectory inference for hematopoiesis in mouse